Parse Biosciences Courses

Getting to know you

Introduction to Single-Cell RNA Seq

Experimental Design

From FASTQ Files to Count Matrices - Part 1

From FASTQ Files to Count Matrices - Part 2

File Conversion

Get started with Trailmaker™

Introduction to Trailmaker™

File and Metadata Upload

Introduction

Step 1 - Classifier Filter

Step 2 - Cell Size Distribution Filter

Step 3 - Mitochondrial Content Filter

Step 4 - Number of genes vs UMIs filter

Step 5 - Doublet Filter

Step 6 & 7 - Data Integration & Configuring Embedding

Real World Examples - Part 1

Real World Examples - Part 2

Real World Examples - Part 3

Data Integration step - part 1 - Normalization

Data Integration step - part 2 - Feature selection

Data Integration step - part 3 - Dimensionality reduction

Data Integration step - part 4 - Data integration

Data Integration step - part 5 - How to assess the quality of data integration

Data Integration step - part 6 - Exclusion of specific gene categories

Data integration step - part 7 - Downsampling

Data Exploration - part 1 - Embedding

Data Exploration - part 2 - Clustering

Data Exploration - part 3 - Cell sets

Data Exploration - part 4 - Cell type annotation

Data Exploration - part 5 - Heatmap and marker genes

Data Exploration - part 6 - Differential expression analysis

Data Exploration - part 7 - Pathway analysis

Plots and Tables - part 1 - Cell sets and Metadata

Plots and Tables - part 2 - Trajectory analysis

Plots and Tables - part 3 - Gene expression

Plots and Tables - part 4 - Differential expression

Plots and Tables - part 5 - Reproducing figures from a paper